Detailed information of SNP:
|
SNP ID:
sf1200322344(Gbrowse)
Chromosome: chr12 Position: 322344 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 88.72% | 11.28% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 497 | 69.42% | 30.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 61.79% | 38.21% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200322344 | C->T | LOC_Os12g01530(LOC_Os12g01530.2) | Non-Synonymous SNP |
| sf1200322344 | C->T | LOC_Os12g01530(LOC_Os12g01530.1) | Non-Synonymous SNP |
| sf1200322344 | C->T | LOC_Os12g01530(LOC_Os12g01530.3) | Non-Synonymous SNP |