Detailed information of SNP:
|
SNP ID:
sf1200333317(Gbrowse)
Chromosome: chr12 Position: 333317 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.60% | 41.40% |
| All Indica | 798 | 28.57% | 71.43% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 30.75% | 69.25% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200333317 | G->A | INTERGENIC | None |