Detailed information of SNP:
|
SNP ID:
sf1200343922(Gbrowse)
Chromosome: chr12 Position: 343922 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1176 | 69.81% | 30.19% |
| All Indica | 734 | 96.59% | 3.41% |
| All Japonica | 363 | 22.04% | 77.96% |
| Aus | 40 | 47.50% | 52.50% |
| Indica I | 340 | 99.71% | 0.29% |
| Indica II | 196 | 90.82% | 9.18% |
| Indica Intermediate | 198 | 96.97% | 3.03% |
| Temperate Japonica | 264 | 14.77% | 85.23% |
| Tropical Japonica | 56 | 58.93% | 41.07% |
| Japonica Intermediate | 43 | 18.60% | 81.40% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 27 | 48.15% | 51.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200343922 | A->T | INTERGENIC | None |