Detailed information of SNP:
|
SNP ID:
sf1200362040(Gbrowse)
Chromosome: chr12 Position: 362040 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 98.63% | 1.37% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 461 | 95.88% | 4.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 98.73% | 1.27% |
| Tropical Japonica | 86 | 97.67% | 2.33% |
| Japonica Intermediate | 59 | 77.97% | 22.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200362040 | C->T | INTERGENIC | None |