Detailed information of SNP:
SNP ID:
sf1200417022(Gbrowse)
Chromosome: chr12 Position: 417022 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 84.50% | 15.50% |
All Indica | 799 | 99.62% | 0.38% |
All Japonica | 497 | 58.35% | 41.65% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 45.97% | 54.03% |
Tropical Japonica | 94 | 92.55% | 7.45% |
Japonica Intermediate | 68 | 72.06% | 27.94% |
Group VI/Aromatic | 14 | 85.71% | 14.29% |
Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1200417022 | G->A | INTERGENIC | None |