Detailed information of SNP:
|
SNP ID:
sf1200436573(Gbrowse)
Chromosome: chr12 Position: 436573 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 61.98% | 38.02% |
| All Indica | 795 | 73.33% | 26.67% |
| All Japonica | 491 | 48.68% | 51.32% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 372 | 59.95% | 40.05% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 329 | 62.61% | 37.39% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200436573 | C->T | LOC_Os12g01730(LOC_Os12g01730.1) | Synonymous |