Detailed information of SNP:
|
SNP ID:
sf1200448391(Gbrowse)
Chromosome: chr12 Position: 448391 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 92.38% | 7.62% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200448391 | C->G | INTERGENIC | None |