Detailed information of SNP:
|
SNP ID:
sf1200545779(Gbrowse)
Chromosome: chr12 Position: 545779 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.82% | 39.18% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200545779 | C->T | LOC_Os12g01922(LOC_Os12g01922.1) | INTRON |