Detailed information of SNP:
SNP ID:
sf1200550570(Gbrowse)
Chromosome: chr12 Position: 550570 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 61.28% | 38.72% |
All Indica | 799 | 98.87% | 1.13% |
All Japonica | 497 | 1.81% | 98.19% |
Aus | 67 | 64.18% | 35.82% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 97.18% | 2.82% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 2.39% | 97.61% |
Tropical Japonica | 94 | 1.06% | 98.94% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1200550570 | A->T | INTERGENIC | None |