Detailed information of SNP:
|
SNP ID:
sf1200585913(Gbrowse)
Chromosome: chr12 Position: 585913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 97.12% | 2.88% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 44 | 97.73% | 2.27% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200585913 | G->A | INTERGENIC | None |