Detailed information of SNP:
|
SNP ID:
sf1200593974(Gbrowse)
Chromosome: chr12 Position: 593974 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 94.48% | 5.52% |
| All Indica | 776 | 90.46% | 9.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 90.41% | 9.59% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 201 | 84.08% | 15.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200593974 | G->A | INTERGENIC | None |