Detailed information of SNP:
|
SNP ID:
sf1200594732(Gbrowse)
Chromosome: chr12 Position: 594732 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 59.37% | 40.63% |
| All Indica | 779 | 80.74% | 19.26% |
| All Japonica | 494 | 24.90% | 75.10% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 369 | 83.20% | 16.80% |
| Indica II | 202 | 87.62% | 12.38% |
| Indica Intermediate | 208 | 69.71% | 30.29% |
| Temperate Japonica | 333 | 5.11% | 94.89% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200594732 | G->A | INTERGENIC | None |