Detailed information of SNP:
|
SNP ID:
sf1200617450(Gbrowse)
Chromosome: chr12 Position: 617450 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 71.46% | 28.54% |
| All Indica | 799 | 73.47% | 26.53% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 62.67% | 37.33% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200617450 | G->A | INTERGENIC | None |