Detailed information of SNP:
|
SNP ID:
sf1200671282(Gbrowse)
Chromosome: chr12 Position: 671282 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 52.08% | 47.92% |
| All Indica | 776 | 18.17% | 81.83% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 370 | 31.08% | 68.92% |
| Indica II | 204 | 9.80% | 90.20% |
| Indica Intermediate | 202 | 2.97% | 97.03% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200671282 | G->A | INTERGENIC | None |