Detailed information of SNP:
|
SNP ID:
sf1200674049(Gbrowse)
Chromosome: chr12 Position: 674049 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 81.70% | 18.30% |
| All Indica | 793 | 89.16% | 10.84% |
| All Japonica | 489 | 71.57% | 28.43% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 369 | 78.32% | 21.68% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 89 | 17.98% | 82.02% |
| Japonica Intermediate | 65 | 40.00% | 60.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200674049 | C->T | LOC_Os12g02180(LOC_Os12g02180.1) | Non-Synonymous SNP |