Detailed information of SNP:
|
SNP ID:
sf1200730266(Gbrowse)
Chromosome: chr12 Position: 730266 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 97.68% | 2.32% |
| All Indica | 763 | 96.07% | 3.93% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 99.19% | 0.81% |
| Indica II | 195 | 90.77% | 9.23% |
| Indica Intermediate | 199 | 95.48% | 4.52% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200730266 | G->A | INTERGENIC | None |