Detailed information of SNP:
|
SNP ID:
sf1200749451(Gbrowse)
Chromosome: chr12 Position: 749451 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 59.72% | 40.28% |
| All Indica | 735 | 28.57% | 71.43% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 355 | 50.14% | 49.86% |
| Indica II | 182 | 6.04% | 93.96% |
| Indica Intermediate | 198 | 10.61% | 89.39% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200749451 | C->T | INTERGENIC | None |