Detailed information of SNP:



SNP ID: sf1200770325(Gbrowse)

Chromosome: chr12

Position: 770325
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 90.83% 9.17%
All Indica797 84.19% 15.81%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I375 83.20% 16.80%
Indica II213 96.71% 3.29%
Indica Intermediate209 73.21% 26.79%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1200770325 C->T INTERGENIC None