Detailed information of SNP:
SNP ID:
sf1200770325(Gbrowse)
Chromosome: chr12 Position: 770325 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 90.83% | 9.17% |
All Indica | 797 | 84.19% | 15.81% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 83.20% | 16.80% |
Indica II | 213 | 96.71% | 3.29% |
Indica Intermediate | 209 | 73.21% | 26.79% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1200770325 | C->T | INTERGENIC | None |