Detailed information of SNP:
|
SNP ID:
sf1200772837(Gbrowse)
Chromosome: chr12 Position: 772837 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 51.41% | 48.59% |
| All Indica | 797 | 25.47% | 74.53% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 33.69% | 66.31% |
| Indica II | 213 | 22.07% | 77.93% |
| Indica Intermediate | 210 | 14.29% | 85.71% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200772837 | T->C | INTERGENIC | None |