Detailed information of SNP:
|
SNP ID:
sf1200799605(Gbrowse)
Chromosome: chr12 Position: 799605 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1301 | 51.04% | 48.96% |
| All Indica | 685 | 20.58% | 79.42% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 308 | 40.91% | 59.09% |
| Indica II | 204 | 4.41% | 95.59% |
| Indica Intermediate | 173 | 3.47% | 96.53% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200799605 | A->G | INTERGENIC | None |