Detailed information of SNP:
|
SNP ID:
sf1200811566(Gbrowse)
Chromosome: chr12 Position: 811566 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1243 | 78.76% | 21.24% |
| All Indica | 630 | 60.00% | 40.00% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 312 | 74.36% | 25.64% |
| Indica II | 155 | 38.06% | 61.94% |
| Indica Intermediate | 163 | 53.37% | 46.63% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200811566 | G->A | LOC_Os12g02430(LOC_Os12g02430.1) | Synonymous |