Detailed information of SNP:
|
SNP ID:
sf1200824909(Gbrowse)
Chromosome: chr12 Position: 824909 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 52.62% | 47.38% |
| All Indica | 793 | 90.29% | 9.71% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 370 | 85.41% | 14.59% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 25.64% | 74.36% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200824909 | A->G | INTERGENIC | None |