Detailed information of SNP:
|
SNP ID:
sf1200825014(Gbrowse)
Chromosome: chr12 Position: 825014 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 56.06% | 43.94% |
| All Indica | 772 | 24.35% | 75.65% |
| All Japonica | 482 | 97.93% | 2.07% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 34.00% | 66.00% |
| Indica II | 212 | 8.49% | 91.51% |
| Indica Intermediate | 210 | 24.29% | 75.71% |
| Temperate Japonica | 326 | 97.55% | 2.45% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200825014 | C->A | INTERGENIC | None |