Detailed information of SNP:
|
SNP ID:
sf1200836825(Gbrowse)
Chromosome: chr12 Position: 836825 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 87.64% | 12.36% |
| All Indica | 788 | 78.68% | 21.32% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 67.84% | 32.16% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 205 | 83.90% | 16.10% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200836825 | C->G | LOC_Os12g02470(LOC_Os12g02470.1) | INTRON |