Detailed information of SNP:
|
SNP ID:
sf1200838145(Gbrowse)
Chromosome: chr12 Position: 838145 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.87% | 45.13% |
| All Indica | 797 | 23.21% | 76.79% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 41.02% | 58.98% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 211 | 9.95% | 90.05% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200838145 | A->G | INTERGENIC | None |