Detailed information of SNP:
|
SNP ID:
sf1200840195(Gbrowse)
Chromosome: chr12 Position: 840195 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.05% | 44.95% |
| All Indica | 798 | 23.43% | 76.57% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 40.91% | 59.09% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 211 | 10.90% | 89.10% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200840195 | C->T | INTERGENIC | None |