Detailed information of SNP:
|
SNP ID:
sf1200848729(Gbrowse)
Chromosome: chr12 Position: 848729 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 87.13% | 12.87% |
| All Indica | 795 | 86.29% | 13.71% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 372 | 80.38% | 19.62% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200848729 | G->C | INTERGENIC | None |