Detailed information of SNP:
|
SNP ID:
sf1200871917(Gbrowse)
Chromosome: chr12 Position: 871917 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.70% | 40.30% |
| All Indica | 797 | 83.31% | 16.69% |
| All Japonica | 497 | 18.71% | 81.29% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 66.84% | 33.16% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200871917 | G->A | INTERGENIC | None |