Detailed information of SNP:
|
SNP ID:
sf1200874101(Gbrowse)
Chromosome: chr12 Position: 874101 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 52.22% | 47.78% |
| All Indica | 777 | 25.61% | 74.39% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 367 | 41.69% | 58.31% |
| Indica II | 204 | 12.75% | 87.25% |
| Indica Intermediate | 206 | 9.71% | 90.29% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200874101 | T->G | INTERGENIC | None |