Detailed information of SNP:
|
SNP ID:
sf1200936807(Gbrowse)
Chromosome: chr12 Position: 936807 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 89.95% | 10.05% |
| All Indica | 783 | 82.38% | 17.62% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 78.47% | 21.53% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 204 | 74.51% | 25.49% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200936807 | T->A | INTERGENIC | None |