Detailed information of SNP:
|
SNP ID:
sf1200947719(Gbrowse)
Chromosome: chr12 Position: 947719 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 69.96% | 30.04% |
| All Indica | 798 | 57.27% | 42.73% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 210 | 56.67% | 43.33% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200947719 | C->T | LOC_Os12g02710(LOC_Os12g02710.1) | INTRON |