Detailed information of SNP:
|
SNP ID:
sf1200963236(Gbrowse)
Chromosome: chr12 Position: 963236 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 58.61% | 41.39% |
| All Indica | 792 | 37.50% | 62.50% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 58.93% | 41.07% |
| Indica II | 209 | 6.22% | 93.78% |
| Indica Intermediate | 208 | 30.29% | 69.71% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200963236 | A->G | INTERGENIC | None |