Detailed information of SNP:
|
SNP ID:
sf1200995819(Gbrowse)
Chromosome: chr12 Position: 995819 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 57.22% | 42.78% |
| All Indica | 799 | 35.79% | 64.21% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1200995819 | G->A | INTERGENIC | None |