Detailed information of SNP:
|
SNP ID:
sf1201001233(Gbrowse)
Chromosome: chr12 Position: 1001233 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 97.81% | 2.19% |
| All Indica | 753 | 96.02% | 3.98% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 94.17% | 5.83% |
| Indica II | 196 | 98.98% | 1.02% |
| Indica Intermediate | 197 | 96.45% | 3.55% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201001233 | C->T | LOC_Os12g02814(LOC_Os12g02814.1) | UTR_3_PRIME |