Detailed information of SNP:
|
SNP ID:
sf1201038384(Gbrowse)
Chromosome: chr12 Position: 1038384 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1266 | 90.92% | 9.08% |
| All Indica | 727 | 89.00% | 11.00% |
| All Japonica | 419 | 92.60% | 7.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 314 | 81.53% | 18.47% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 203 | 92.61% | 7.39% |
| Temperate Japonica | 293 | 95.22% | 4.78% |
| Tropical Japonica | 75 | 88.00% | 12.00% |
| Japonica Intermediate | 51 | 84.31% | 15.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201038384 | C->A | INTERGENIC | None |