Detailed information of SNP:
|
SNP ID:
sf1201179694(Gbrowse)
Chromosome: chr12 Position: 1179694 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 73.47% | 26.53% |
| All Indica | 797 | 66.00% | 34.00% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 61.50% | 38.50% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 56.19% | 43.81% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201179694 | A->G | LOC_Os12g03110(LOC_Os12g03110.1) | Non-Synonymous SNP |