Detailed information of SNP:
|
SNP ID:
sf1201205550(Gbrowse)
Chromosome: chr12 Position: 1205550 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 51.42% | 48.58% |
| All Indica | 776 | 66.24% | 33.76% |
| All Japonica | 449 | 18.93% | 81.07% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 47.01% | 52.99% |
| Indica II | 202 | 87.13% | 12.87% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 305 | 20.00% | 80.00% |
| Tropical Japonica | 82 | 21.95% | 78.05% |
| Japonica Intermediate | 62 | 9.68% | 90.32% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201205550 | T->C | INTERGENIC | None |