Detailed information of SNP:
|
SNP ID:
sf1201218940(Gbrowse)
Chromosome: chr12 Position: 1218940 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1260 | 95.00% | 5.00% |
| All Indica | 730 | 100.00% | 0.00% |
| All Japonica | 410 | 85.85% | 14.15% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 343 | 100.00% | 0.00% |
| Indica II | 188 | 100.00% | 0.00% |
| Indica Intermediate | 199 | 100.00% | 0.00% |
| Temperate Japonica | 275 | 84.00% | 16.00% |
| Tropical Japonica | 74 | 85.14% | 14.86% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201218940 | C->T | LOC_Os12g03190(LOC_Os12g03190.1) | INTRON |