Detailed information of SNP:
|
SNP ID:
sf1201243694(Gbrowse)
Chromosome: chr12 Position: 1243694 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 86.45% | 13.55% |
| All Indica | 797 | 85.45% | 14.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201243694 | T->C | LOC_Os12g03250(LOC_Os12g03250.1) | Non-Synonymous SNP |