Detailed information of SNP:
|
SNP ID:
sf1201299655(Gbrowse)
Chromosome: chr12 Position: 1299655 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 90.77% | 9.23% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201299655 | A->C | LOC_Os12g03340(LOC_Os12g03340.1) | UTR_5_PRIME |