Detailed information of SNP:
|
SNP ID:
sf1201338510(Gbrowse)
Chromosome: chr12 Position: 1338510 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1336 | 58.01% | 41.99% |
| All Indica | 787 | 96.06% | 3.94% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 3 | 33.33% | 66.67% |
| Indica I | 367 | 94.28% | 5.72% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 36 | 30.56% | 69.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201338510 | G->C | INTERGENIC | None |