Detailed information of SNP:
|
SNP ID:
sf1201344685(Gbrowse)
Chromosome: chr12 Position: 1344685 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.73% | 48.27% |
| All Indica | 799 | 16.77% | 83.23% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201344685 | C->T | INTERGENIC | None |