Detailed information of SNP:
|
SNP ID:
sf1201367119(Gbrowse)
Chromosome: chr12 Position: 1367119 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 51.52% | 48.48% |
| All Indica | 798 | 15.91% | 84.09% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 18.72% | 81.28% |
| Indica II | 213 | 6.10% | 93.90% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201367119 | T->C | INTERGENIC | None |