Detailed information of SNP:
|
SNP ID:
sf1201367299(Gbrowse)
Chromosome: chr12 Position: 1367299 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.94% | 48.06% |
| All Indica | 799 | 16.90% | 83.10% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 19.47% | 80.53% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201367299 | A->T | INTERGENIC | None |