Detailed information of SNP:
|
SNP ID:
sf1201384569(Gbrowse)
Chromosome: chr12 Position: 1384569 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 57.21% | 42.79% |
| All Indica | 796 | 90.45% | 9.55% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 86.90% | 13.10% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201384569 | C->T | INTERGENIC | None |