Detailed information of SNP:
|
SNP ID:
sf1201428922(Gbrowse)
Chromosome: chr12 Position: 1428922 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.13% | 48.87% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 86.10% | 13.90% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201428922 | C->T | LOC_Os12g03570(LOC_Os12g03570.1) | Synonymous |