Detailed information of SNP:
|
SNP ID:
sf1201430377(Gbrowse)
Chromosome: chr12 Position: 1430377 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 50.60% | 49.40% |
| All Indica | 795 | 87.17% | 12.83% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 373 | 84.99% | 15.01% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201430377 | A->G | LOC_Os12g03570(LOC_Os12g03570.1) | INTRON |