Detailed information of SNP:
|
SNP ID:
sf1201442848(Gbrowse)
Chromosome: chr12 Position: 1442848 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.51% | 47.49% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201442848 | A->G | LOC_Os12g03594(LOC_Os12g03594.1) | INTRON |