Detailed information of SNP:
|
SNP ID:
sf1201450787(Gbrowse)
Chromosome: chr12 Position: 1450787 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 50.74% | 49.26% |
| All Indica | 797 | 14.93% | 85.07% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 15.01% | 84.99% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 211 | 18.01% | 81.99% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201450787 | A->G | INTERGENIC | None |