Detailed information of SNP:
|
SNP ID:
sf1201511648(Gbrowse)
Chromosome: chr12 Position: 1511648 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 53.08% | 46.92% |
| All Indica | 794 | 91.69% | 8.31% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 65 | 1.54% | 98.46% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1201511648 | G->A | LOC_Os12g03730(LOC_Os12g03730.1) | INTRON |